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The analog button is on when I do the key bindings (it doesn't turn off)

Can you check all inputs in windows gamepad configuration tool? If it is not correctly working for windows it wount work for lilypad.

It's working correctly, however the analog button seems to be a little weird. I've seen in a video that the D-pad button, when it is configured to the D-pad in PCSX2 it comes up as Hat-S something. Is that the problem possibly?

Edit: I'm unable to turn the analog off. When I press the analog button it goes out then comes back in a second. It won't let me turn it off.

Its ok. It needs to be turned on.

Can you please.screenshot windows gamepad control where all input sources/ganepad keys are displayed?